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Chocolate spot: identify, prevent, control

Updated October 2026

Worst on autumn and winter sown broad beans in damp, mild spells from late winter to November, throughout New Zealand.

Chocolate spot is a fungal disease of broad beans caused by Botrytis fabae, a relative of grey mould. In New Zealand it is most troublesome on broad beans in early spring, and in a wet season it can blacken whole plants, kill flowers and cut the harvest sharply. Most crops cope with a light spotting, so the aim is to keep plants healthy and the air moving rather than to spray at the first spot.

Botrytis fabae

Broad bean leaves and stems covered in many small reddish-brown spots and larger brown blotches
Chocolate spot on broad bean leaves and stems, Netherlands. Photo: Tuinboon Chocoladevlekkenziekte, Rasbak, CC BY-SA 3.0, resized, via Wikimedia Commons

How to identify it

What it is often confused with

Rust

Broad bean rust has raised orange-brown powdery pustules that rub off on your fingers and usually appears later in warmer weather. Chocolate spot spots are flat and do not leave powder.

Botrytis

Grey mould (Botrytis cinerea) causes fluffy grey mould on soft, damaged growth of many plants. Chocolate spot is a related Botrytis that attacks healthy broad bean leaves with small brown spots first.

Leaf spot

Ascochyta leaf spot of beans makes larger, pale grey to brown spots with dark margins and tiny dark dots in the centre, rather than many small chocolate-brown spots.

When and where it is worst

Chocolate spot occurs throughout New Zealand and has been recorded as troublesome in Auckland, Hastings and Nelson, causing losses in wet seasons. It is worst in humid northern districts and in sheltered, damp gardens in Wellington, the West Coast and Southland, but any broad bean crop can be hit in a wet spring.

The fungus survives on old bean debris and on seed, and spreads by wind and rain splash. It is favoured by temperatures of roughly 15 to 22 °C with high humidity or leaves that stay wet for long periods, so late winter and spring, from August to November, are the main danger months. Plants under stress from acidic soil, poor drainage, low potassium or overcrowding are hit harder.

Plants it affects

These plants in our library list it as a problem to watch for.

How to prevent it

Organic control, step by step

Conventional control

Frequently asked questions

Can I eat broad beans from plants with chocolate spot?

Yes. The beans inside healthy pods are safe to eat. Discard any pods that are badly spotted or rotting.

Should I pull out plants with chocolate spot?

Not if they have only small scattered spots, as they will usually still crop well. Pull out and bin plants that have blackened and stopped flowering, so they do not spread spores to the rest of the row.

Why does chocolate spot get worse in spring?

Mild temperatures, frequent rain and dense, fast-growing crops in spring keep the leaves damp for long periods, which is exactly what the fungus needs to spread.

Are some broad bean varieties resistant to chocolate spot?

No variety is fully resistant, but some show better tolerance. Good spacing, good drainage and balanced feeding make more difference than variety choice in a home garden.

Related problems

Sources: Manaaki Whenua, Biota of New Zealand: Botrytis fabae; Royal New Zealand Institute of Horticulture, Plant Doctor: Spots on broad beans; Yates New Zealand, Liquid Copper Fungicide Concentrate. Identification and control follow these sources. Always read the product label before use.

Track it in the app. The free Planting Season planner lists the pests and diseases to watch for on every plant in your garden, tuned to your region.